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Friday, October 31, 2008

classification research info

















Six kingdoms







In the years around 1980 there was an emphasis on phylogeny and redefining the kingdoms to be monophyletic groups, groups made up of relatively closely related organisms. The Animalia, Plantae, and Fungi were generally reduced to core groups of closely related forms, and the others placed into the Protista. Based on RNA studies Carl Woese divided the prokaryotes (Kingdom Monera) into two kingdoms, called Eubacteria and Archaebacteria. Carl Woese attempted to establish a Three Primary Kingdom (or Urkingdom) system in which Plants, Animals, Protista, and Fungi were lumped into one primary kingdom of all eukaryotes. The Eubacteria and Archaebacteria made up the other two urkingdoms. The initial use of "six Kingdom systems" represents a blending of the classic Five Kingdom system and Woese's Three Kingdom system. Such six Kingdom systems have become standard in many works.[3]







A variety of new eukaryotic kingdoms were also proposed, but most were quickly invalidated, ranked down to phyla or classes, or abandoned. The only one which is still in common use is the kingdom Chromista proposed by Cavalier-Smith, including organisms such as kelp, diatoms, and water moulds. Thus the eukaryotes are divided into three primarily heterotrophic groups, the Animalia, Fungi, and Protozoa, and two primarily photosynthetic groups, the Plantae (including red and green algae) and Chromista. However, it has not become widely used because of uncertainty over the monophyly of the latter two kingdoms.







Woese stresses genetic similarity over outward appearances and behaviour, relying on comparisons of ribosomal RNA genes at the molecular level to sort out classification categories. A plant does not look like an animal, but at the cellular level, both groups are eukaryotes, having similar subcellular organization, including cell nuclei, which the Eubacteria and Archaebacteria do not have. More importantly, plants, animals, fungi, and protists are more similar to each other in their genetic makeup at the molecular level, based on RNA studies, than they are to either the Eubacteria or Archaebacteria. Woese also found that all of the eukaryotes, lumped together as one group, are more closely related, genetically, to the Archaebacteria than they are to the Eubacteria. This means that the Eubacteria and Archaebacteria are separate groups even when compared to the eukaryotes. So, Woese established the Three-domain system, clarifying that all the Eukaryotes are more closely genetically related compared to their genetic relationship to either the bacteria or the archaebacteria, without having to replace the "six kingdom systems" with a three kingdom system. The Three Domain system is a "six kingdom system" that unites the eukaryotic kingdoms into the Eukarya Domain based on their relative genetic similarity when compared to the Bacteria Domain and the Archaea Domain. Woese also recognized that the Protista Kingdom is not a monophyletic group and might be further divided at the level of Kingdom. Others have divided the Protista Kingdom into the Protozoa and the Chromista, for instance.







[edit] Recent Advances







Classification is an ongoing area of research and discussion. As new findings and technologies become available they allow the refinement of the model. For example, gene sequencing techniques allow the comparison of the genome of different groups (Phylogenomics). A study published in 2007 by Fabien Burki, et al[4] proposes four high level groups of eukaryotes based on phylogenomics research.







   1. Plantae (green and red algae, and plants)



   2. Opisthokonts (amoebas, fungi, and animals)



   3. Excavata (free-living and parasitic protists)



   4. SAR (acronym for Stramenopiles, Alveolates, and Rhizaria–the names of some of its members. Burki found that the previously split groups Rhizaria and Chromalveolates were more similar in 123 common genes than once thought.)







Recent phylogenetic studies suggest there are anywhere from 18 to over 30 different kingdoms that have been discovered.







-  http://en.wikipedia.org/wiki/Subkingdom















________________________





























ANIMALS : The animal kingdom is the largest kingdom with over 1 million known species







PLANT :You are probably quite familiar with the members of this kingdom as it contains all the plants that you have come to know - flowering plants, mosses, and ferns. Plants are all multicellular and consist of complex cells. With over 250,000 species, the plant kingdom is the second largest kingdom. Plant species range from the tiny green mosses to giant trees.In addition, plants are autotrophs, organisms that make their own food.All animals consist of many complex cells. They are also heterotrophs.







PROTISTS : Slime molds and algae are protists.



Sometimes they are called the odds and ends kingdom because its members are so different from one another. Protists include all microscopic organisms that are not bacteria, not animals, not plants and not fungi.







FUNGI : Mushrooms, mold and mildew are all examples of organisms in the kingdom fungi. Most fungi are multicellular and consists of many complex cells.







Archaebacteria : Archaebacteria are found in extreme environments such as hot boiling water and thermal vents under conditions with no oxygen or highly acid environments.







Eubacteria :Like archaebacteria, eubacteria are complex and single celled. Most bacteria are in the EUBACTERIA kingdom. They are the kinds found everywhere and are the ones people are most familiar withEubacteria are classified in their own kingdom because their chemical makeup is different. Most eubacteria are helpful. Some produce vitamins and foods like yogurt.











I got this information off of this website. There is tons more about the 6 kingdoms on it. If you still need help please email me at caitlin_cac@yahoo.com. Hope this helps!!







- http://au.answers.yahoo.com/question/index?qid=20080105110326AAAmx7Y







____________________





























Mammals



Common Name Scientific Name



antelope, prong-horned
Antilocapra americana (Ord)



badger
Taxidea taxus (Shreber)



bats * 



free-tailed
Tadarida spp (3)



mastif
Eumops spp (2)



plain-nosed
Myotis spp (9)



bear, black
Euarctos americanus (Pallas)



beaver
Castor canadensis Kuhle



bobcat
Lynx rufus (Shreber)



chipmunk
Eutamias spp (4)



coati (or coatimundi)
Nasua narica (Linnaeus)



coyote
Canis latrans Say



deer 



mule (or black-tailed)
Odocoileus hemionus (Rafinesque)



white-tailed (or eastern)
O. virginianus (Zimmermann)



elk
Cervus canadensis (Erxleben)



fox 



gray
Urocyon cinereoargenteus (Shreber)



Kit
Vulpes macrotis Merriam



gopher, pocket
Thomomys spp (3)



javelina
Pecari tajacu (Linnaeus)



mountain lion
Felis concolor Linnaeus



mouse (most common) 



cactus
Peromyscus eremicus (Baird)



pinyon
P. truei (Shufeldt) **



pocket
Perognathus spp (10)



muskrat
Ondatra zibethica (Linnaeus)



otter, river
Lutra canadensis (Shreber)



prairie dog, Gunnison's
Cynomys gunnisoni



porcupine
Erethizon dorsatum Linnaeus



rabbit 



cottontail
Sylvilagus spp (3)



jack
Lepus spp (2)



raccoon
Procyon lotor (Linnaeus)



rat 



kangaroo
Dipodomys spp (5)



pack
Neotoma albigula Hartley



wood
Neotoma spp (4)



ringtail
Bassariscus astutus (Lichenstein)



sheep, bighorn
Ovis canadensis Shaw



shrew 



desert
Notiosorex crawfordi (Coues)



vagrant (and others)
Sorex spp (4)



skunk 



hog-nosed
Conepatus mesoleucus Lichenstein



hooded
Mephitis macroura (Lichenstein)



striped
M. mephitis (Shreber)



spotted
Spilogale putorius (Linnaeus)



squirrel 



Abert's
Sciurus aberti Woodhouse



Kaibab Sub S.
aberti



Apache
S. apache J.A. Allen



Arizona gray
S. arizonensis (Coues)



red
Tamiasciurus hudsonicus



ground
Citellus spp (7)



vole 



long-tailed
Microtus longicaudus Merriam



Mexican
M. Mexicanus (Saussure)



montane
M. montanus (Peale)











[page 158]







Birds



Common Name Scientific Name



Dove 



Mourning
Zenaida macroura (Linnaeus)



White-winged
Z. asiatica (Linnaeus)



Eagle 



Bald
Haliaeetus leucocephalus (Linnaeus)



Golden
Aquila chrysaetos (Linnaeus)



Gnatcatcher, Blue-gray
Polioptila caerulea (Linnaeus)



Grosbeak, Blue
Guiraea caerulea (Linnaeus)



Grouse, Blue (or Dusky)
Dendragapus obscurus (Say)



Hawk 



Cooper's
Accipiter cooperii (Bonaparte)



Red-tailed (or Common)
Buteo jamaicensis (Gmelin)



Jay, Rocky Mountain
(also Gray or Canada) Perisoreus canadensis (Linnaeus)



Kestrel, American
Falco sparverius Linnaeus



Owl 



Elf
Micrathene whitneyi (Cooper)



Great-Horned
Bubo virginianus (Gmelin)



Pelican 



Brown
Pelecanus occidentalis Linnaeus



White
P. erythrorhynchos Gmelin



Pigeon, Band-tailed
Columba fasciata Say



Pipit, Water (or American)
Anthus spinoletta (Linnaeus)



Pheasant
Phasianus colchicas



Quail 



Bobwhite
Colinus virginianus



Gambel's (or Desert)
Lophortyx Gambelii Gambel



Scaled
Callipepla squamata (Vigors)



Roadrunner
Geococcyx californianus (Lesson)



Sapsucker, Yellow-bellied
Sphyrapicus varius (Linnaeus)



Sparrow 



Chipping
Spizella passerina (Bechstein)



Vesper
Pooecetes gramineus (Gmelin)



Titmouse, Plain
Parus inornatus Gambel



Turkey, Wild
Meleagris gallopavo Linnaeus



Vulture, Turkey
Carthartes aura (Linnaeus)



Warbler, Lucy's
Vermivora luciae (Cooper)



Woodpecker 



Acorn
Melanerpes formicivorus (Swainson)



Gila
Centurus uropygialis Baird



Wren, Cactus
Campylorhynchus brunneicapillus (Lafresnaye)







Amphibians and Reptiles



Common Name Scientific Name



frog, canyon treefrog
Hyla arenicolor Cope



lizard 



banded gecko
Coleonyx variegatus Baird



desert iguana
Dipsosaurus dorsalis Baird and Girard



Gila monster
Heloderma suspectum Cope



side-blotched lizard
Uta stansburiana Baird and Girard



whiptail lizard
Cnemidophorus spp (6)



salamander, tiger
Ambystoma tigrinum Green



snake 



blind snake, western
Leptotyphlops humilis Baird and Girard



bullsnake (or gopher snake)
Pituophis melanoleucus Daudin



burrowing snake, banded
Chilomeniscus cinctus Cope



coral snake, Arizona
Micruroides euryxanthus Kennicott



garter snake, checkered
Thamnophis marcianus Baird and Girard



glossy snake
Arizona elegans Kennicott



leaf-nosed snake, saddled
Phyllorhynchus browni Stejneger



leaf-nosed snake, spotted
P. decurtatus Cope



long-nosed snake
Rhinocheilus lecontei Baird and Girard



shovel-nosed snake, Sonora
Chionactis palarostris Kaluber



shovel-nosed snake, western
C. occipitalis Hallowell



whipsnake (or coachwhip)
Masticophis flagellum Shaw



whipsnake, striped
M. taeniatus Hallowell



toad 



Colorado River toad
Bufo alvarius Girard



Great Plains toad
B. cognatus Say



spadefoot toad, Couch's
Scaphiopus couchi Baird



spadefoot toad, western
S. (Spea) hammondi Baird



tortoise, desert
Gopherus agassizi Cooper







- http://southwest.library.arizona.edu/azso/back.1_div.3.html







_______________________









Mammals


Common Name Scientific Name


antelope, prong-horned Antilocapra americana (Ord)


badger Taxidea taxus (Shreber)


bats * 


free-tailed Tadarida spp (3)


mastif Eumops spp (2)


plain-nosed Myotis spp (9)


bear, black Euarctos americanus (Pallas)


beaver Castor canadensis Kuhle


bobcat Lynx rufus (Shreber)


chipmunk Eutamias spp (4)


coati (or coatimundi) Nasua narica (Linnaeus)


coyote Canis latrans Say


deer 


mule (or black-tailed) Odocoileus hemionus (Rafinesque)


white-tailed (or eastern) O. virginianus (Zimmermann)


elk Cervus canadensis (Erxleben)


fox 


gray Urocyon cinereoargenteus (Shreber)


Kit Vulpes macrotis Merriam


gopher, pocket Thomomys spp (3)


javelina Pecari tajacu (Linnaeus)


mountain lion Felis concolor Linnaeus


mouse (most common) 


cactus Peromyscus eremicus (Baird)


pinyon P. truei (Shufeldt) **


pocket Perognathus spp (10)


muskrat Ondatra zibethica (Linnaeus)


otter, river Lutra canadensis (Shreber)


prairie dog, Gunnison's Cynomys gunnisoni


porcupine Erethizon dorsatum Linnaeus


rabbit 


cottontail Sylvilagus spp (3)


jack Lepus spp (2)


raccoon Procyon lotor (Linnaeus)


rat 


kangaroo Dipodomys spp (5)


pack Neotoma albigula Hartley


wood Neotoma spp (4)


ringtail Bassariscus astutus (Lichenstein)


sheep, bighorn Ovis canadensis Shaw


shrew 


desert Notiosorex crawfordi (Coues)


vagrant (and others) Sorex spp (4)


skunk 


hog-nosed Conepatus mesoleucus Lichenstein


hooded Mephitis macroura (Lichenstein)


striped M. mephitis (Shreber)


spotted Spilogale putorius (Linnaeus)


squirrel 


Abert's Sciurus aberti Woodhouse


Kaibab Sub S. aberti


Apache S. apache J.A. Allen


Arizona gray S. arizonensis (Coues)


red Tamiasciurus hudsonicus


ground Citellus spp (7)


vole 


long-tailed Microtus longicaudus Merriam


Mexican M. Mexicanus (Saussure)


montane M. montanus (Peale)






[page 158]




Birds


Common Name Scientific Name


Dove 


Mourning Zenaida macroura (Linnaeus)


White-winged Z. asiatica (Linnaeus)


Eagle 


Bald Haliaeetus leucocephalus (Linnaeus)


Golden Aquila chrysaetos (Linnaeus)


Gnatcatcher, Blue-gray Polioptila caerulea (Linnaeus)


Grosbeak, Blue Guiraea caerulea (Linnaeus)


Grouse, Blue (or Dusky) Dendragapus obscurus (Say)


Hawk 


Cooper's Accipiter cooperii (Bonaparte)


Red-tailed (or Common) Buteo jamaicensis (Gmelin)


Jay, Rocky Mountain (also Gray or Canada) Perisoreus canadensis (Linnaeus)


Kestrel, American Falco sparverius Linnaeus


Owl 


Elf Micrathene whitneyi (Cooper)


Great-Horned Bubo virginianus (Gmelin)


Pelican 


Brown Pelecanus occidentalis Linnaeus


White P. erythrorhynchos Gmelin


Pigeon, Band-tailed Columba fasciata Say


Pipit, Water (or American) Anthus spinoletta (Linnaeus)


Pheasant Phasianus colchicas


Quail 


Bobwhite Colinus virginianus


Gambel's (or Desert) Lophortyx Gambelii Gambel


Scaled Callipepla squamata (Vigors)


Roadrunner Geococcyx californianus (Lesson)


Sapsucker, Yellow-bellied Sphyrapicus varius (Linnaeus)


Sparrow 


Chipping Spizella passerina (Bechstein)


Vesper Pooecetes gramineus (Gmelin)


Titmouse, Plain Parus inornatus Gambel


Turkey, Wild Meleagris gallopavo Linnaeus


Vulture, Turkey Carthartes aura (Linnaeus)


Warbler, Lucy's Vermivora luciae (Cooper)


Woodpecker 


Acorn Melanerpes formicivorus (Swainson)


Gila Centurus uropygialis Baird


Wren, Cactus Campylorhynchus brunneicapillus (Lafresnaye)




Amphibians and Reptiles


Common Name Scientific Name


frog, canyon treefrog Hyla arenicolor Cope


lizard 


banded gecko Coleonyx variegatus Baird


desert iguana Dipsosaurus dorsalis Baird and Girard


Gila monster Heloderma suspectum Cope


side-blotched lizard Uta stansburiana Baird and Girard


whiptail lizard Cnemidophorus spp (6)


salamander, tiger Ambystoma tigrinum Green


snake 


blind snake, western Leptotyphlops humilis Baird and Girard


bullsnake (or gopher snake) Pituophis melanoleucus Daudin


burrowing snake, banded Chilomeniscus cinctus Cope


coral snake, Arizona Micruroides euryxanthus Kennicott


garter snake, checkered Thamnophis marcianus Baird and Girard


glossy snake Arizona elegans Kennicott


leaf-nosed snake, saddled Phyllorhynchus browni Stejneger


leaf-nosed snake, spotted P. decurtatus Cope


long-nosed snake Rhinocheilus lecontei Baird and Girard


shovel-nosed snake, Sonora Chionactis palarostris Kaluber


shovel-nosed snake, western C. occipitalis Hallowell


whipsnake (or coachwhip) Masticophis flagellum Shaw


whipsnake, striped M. taeniatus Hallowell


toad 


Colorado River toad Bufo alvarius Girard


Great Plains toad B. cognatus Say


spadefoot toad, Couch's Scaphiopus couchi Baird


spadefoot toad, western S. (Spea) hammondi Baird


tortoise, desert Gopherus agassizi Cooper




- http://southwest.library.arizona.edu/azso/back.1_div.3.html



______________________





ANIMALS : The animal kingdom is the largest kingdom with over 1 million known species




PLANT :You are probably quite familiar with the members of this kingdom as it contains all the plants that you have come to know - flowering plants, mosses, and ferns. Plants are all multicellular and consist of complex cells. With over 250,000 species, the plant kingdom is the second largest kingdom. Plant species range from the tiny green mosses to giant trees.In addition, plants are autotrophs, organisms that make their own food.All animals consist of many complex cells. They are also heterotrophs.




PROTISTS : Slime molds and algae are protists.


Sometimes they are called the odds and ends kingdom because its members are so different from one another. Protists include all microscopic organisms that are not bacteria, not animals, not plants and not fungi.




FUNGI : Mushrooms, mold and mildew are all examples of organisms in the kingdom fungi. Most fungi are multicellular and consists of many complex cells.




Archaebacteria : Archaebacteria are found in extreme environments such as hot boiling water and thermal vents under conditions with no oxygen or highly acid environments.




Eubacteria :Like archaebacteria, eubacteria are complex and single celled. Most bacteria are in the EUBACTERIA kingdom. They are the kinds found everywhere and are the ones people are most familiar withEubacteria are classified in their own kingdom because their chemical makeup is different. Most eubacteria are helpful. Some produce vitamins and foods like yogurt.











Nathan Watson


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